arborize

• arborize package
  • Subpackages
    • arborize.builders package
      • Module contents
    • arborize.schematics package
      • Module contents
  • Submodules
  • arborize.constraints module
    • CablePropertyConstraints
    • CablePropertyConstraintsDict
      • CablePropertyConstraintsDict.Ra
      • CablePropertyConstraintsDict.cm
    • CableTypeConstraints
      • CableTypeConstraints.cable
      • CableTypeConstraints.default()
      • CableTypeConstraints.ions
      • CableTypeConstraints.mechs
      • CableTypeConstraints.synapses
    • CableTypeConstraintsDict
      • CableTypeConstraintsDict.cable
      • CableTypeConstraintsDict.ions
      • CableTypeConstraintsDict.mechanisms
      • CableTypeConstraintsDict.synapses
    • Constraint
      • Constraint.from_value()
      • Constraint.lower
      • Constraint.set_tolerance()
      • Constraint.tolerance
      • Constraint.upper
    • ConstraintValue
    • ConstraintsDefinition
      • ConstraintsDefinition.cable_properties_class
      • ConstraintsDefinition.cable_type_class
      • ConstraintsDefinition.ion_class
      • ConstraintsDefinition.mechanism_class
      • ConstraintsDefinition.set_tolerance()
      • ConstraintsDefinition.synapse_class
    • ConstraintsDefinitionDict
      • ConstraintsDefinitionDict.cable_types
      • ConstraintsDefinitionDict.synapse_types
    • IonConstraints
    • IonConstraintsDict
      • IonConstraintsDict.ext_con
      • IonConstraintsDict.int_con
      • IonConstraintsDict.rev_pot
    • MechanismConstraints
      • MechanismConstraints.parameters
    • SynapseConstraints
    • SynapseConstraintsDict
    • define_constraints()
  • arborize.definitions module
    • CP
    • CT
    • CableProperties
      • CableProperties.Ra
      • CableProperties.cm
      • CableProperties.to_dict()
    • CablePropertiesDict
      • CablePropertiesDict.Ra
      • CablePropertiesDict.cm
    • CableType
      • CableType.add_ion()
      • CableType.add_mech()
      • CableType.add_synapse()
      • CableType.anchor()
      • CableType.assert_()
      • CableType.cable
      • CableType.copy()
      • CableType.default()
      • CableType.ions
      • CableType.mechs
      • CableType.merge()
      • CableType.set()
      • CableType.synapses
      • CableType.to_dict()
    • CableTypeDict
      • CableTypeDict.cable
      • CableTypeDict.ions
      • CableTypeDict.mechanisms
      • CableTypeDict.synapses
    • Definition
      • Definition.add_cable_type()
      • Definition.add_synapse_type()
      • Definition.cable_properties_class
      • Definition.cable_type_class
      • Definition.copy()
      • Definition.get_cable_types()
      • Definition.get_synapse_types()
      • Definition.ion_class
      • Definition.mechanism_class
      • Definition.synapse_class
      • Definition.to_dict()
    • ExpandedSynapseDict
      • ExpandedSynapseDict.mechanism
      • ExpandedSynapseDict.parameters
    • I
    • Ion
      • Ion.ext_con
      • Ion.int_con
      • Ion.rev_pot
      • Ion.to_dict()
    • IonDict
      • IonDict.ext_con
      • IonDict.int_con
      • IonDict.rev_pot
    • M
    • Mechanism
      • Mechanism.copy()
      • Mechanism.merge()
      • Mechanism.to_dict()
    • ModelDefinition
      • ModelDefinition.cable_properties_class
      • ModelDefinition.cable_type_class
      • ModelDefinition.ion_class
      • ModelDefinition.mechanism_class
      • ModelDefinition.synapse_class
    • ModelDefinitionDict
      • ModelDefinitionDict.cable_types
      • ModelDefinitionDict.synapse_types
    • S
    • Synapse
      • Synapse.copy()
      • Synapse.mech_id
    • default_ions_dict
    • define_model()
    • is_mech_id()
    • mechdict
    • to_mech_id()
  • arborize.exceptions module
    • ArborizeError
    • ArborizeWarning
    • ConstructionError
    • FrozenError
    • ModelDefinitionError
    • ModelError
    • SchematicError
    • TransmitterError
    • UnconnectedPointInSpaceWarning
    • UnknownLocationError
    • UnknownSynapseError
  • arborize.parameter module
    • CableParameter
      • CableParameter.set_cable_params()
    • IonParameter
    • MechParameter
    • Parameter
  • arborize.schematic module
    • Branch
      • Branch.children
      • Branch.parent
      • Branch.points
    • CableBranch
      • CableBranch.append()
      • CableBranch.children
      • CableBranch.parent
    • Point
    • Schematic
      • Schematic.create_empty()
      • Schematic.create_location()
      • Schematic.create_name()
      • Schematic.definition
      • Schematic.freeze()
      • Schematic.get_cable_types()
      • Schematic.get_compound_cable_types()
      • Schematic.get_synapse_types()
      • Schematic.name
      • Schematic.set_next_id()
      • Schematic.set_param()
    • UnitBranch
      • UnitBranch.append()
      • UnitBranch.children
      • UnitBranch.definition
      • UnitBranch.labels
      • UnitBranch.parent
    • throw_frozen()
  • arborize.synapse module
    • Synapse
      • Synapse.presynaptic()
      • Synapse.record()
      • Synapse.stimulate()
  • arborize._util module
    • Assert
      • Assert.assert_()
    • Copy
      • Copy.copy()
    • Iterable
    • MechId
    • MechIdTuple
    • Merge
      • Merge.merge()
    • get_arclengths()
    • get_location_name()
    • is_empty_constraint()
  • Module contents
    • CableProperties
      • CableProperties.Ra
      • CableProperties.cm
      • CableProperties.to_dict()
    • CableType
      • CableType.add_ion()
      • CableType.add_mech()
      • CableType.add_synapse()
      • CableType.anchor()
      • CableType.assert_()
      • CableType.cable
      • CableType.copy()
      • CableType.default()
      • CableType.ions
      • CableType.mechs
      • CableType.merge()
      • CableType.set()
      • CableType.synapses
      • CableType.to_dict()
    • Ion
      • Ion.ext_con
      • Ion.int_con
      • Ion.rev_pot
      • Ion.to_dict()
    • Mechanism
      • Mechanism.copy()
      • Mechanism.merge()
      • Mechanism.to_dict()
    • ModelDefinition
      • ModelDefinition.cable_properties_class
      • ModelDefinition.cable_type_class
      • ModelDefinition.ion_class
      • ModelDefinition.mechanism_class
      • ModelDefinition.synapse_class
    • arbor_build()
    • bluepyopt_build()
    • bsb_schematic()
    • define_constraints()
    • define_model()
    • file_schematic()
    • is_mech_id()
    • neuron_build()